I know it's an old thread, but it's the main hit on Google when I myself went looking for THE list of SNES to GBA ports. This list is definitely the most complete, but I noticed it was still missing a few. So I did my own research and decided to turn it into a video for my own small YT channel. Here's the video I made out of the full list:
https://www.youtube.com/watch?v=xurqNOafU6YAnyway, here is the full list I came up with. I added an asterisk after each game that isn't on the list in the first post and a double asterisk after each game not mentioned in this thread at all:
Aero the Acro-Bat
Angelique**
Blackthorne
Breath of Fire
Breath of Fire II
Contra III
Crazy Chase**
Desert Strike
Disney's Aladdin
Disney's Magical Quest
Disney's Magical Quest 2
Disney's Magical Quest 3
Donkey Kong Country
Donkey Kong Country 2
Donkey Kong Country 3
Doom*
EarthBound*
Earthworm Jim
Earthworm Jim 2
Final Fantasy IV
Final Fantasy V
Final Fantasy VI
Final Fight
Ganbare Goemon (Legend of the Mystical Ninja)
Ganbare Goemon 2*
Legend of Zelda, The: A Link to the
Lost Vikings, The
Mega Man & Bass
Metal Max 2**
Mortal Kombat 3*
Mr. Nutz**
Phalanx
Pitfall: The Mayan Adventure*
Prehistorik Man
R-Type III: The Third Lightning
Rock n' Roll Racing
Shin Megami Tensei*
Shin Megami Tensei II*
SimCity 2000*
Smurfs, The*
Soccer Kid
Super Ghouls 'n Ghosts
Super Mario Bros. 2
Super Mario Bros. 3
Super Mario World
Super Mario World 2: Yoshi's Island
Tales of Phantasia
Wolfenstein 3D*
Before I could begin, I had to create some rules on which games to count and which to leave out:
-Naturally, I included games that were direct ports of SNES-only games.
-I also chose to include games that were a port of a multi-platform game that also appeared on the SNES, even if it didn’t use that version as a base (ex. Doom). I did this because these games are often counted as ports and can be compared 1:1 well in a video.
-I decided to not include games that differ completely in gameplay/level design (Super James Pond on SNES/James Pond 2 on GBA). Those are more like remakes than ports.
You can remove Doom, SC2000 and Wolfenstein from my list as I can see why you wouldn't include them. But Metal Max 2, Angelique, Mr. Nutz and Crazy Chase are all clear ports.
I think I found every port in my research for my video, but if anyone has a good case to add another title to the above list then let me know.